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» Relational Parametricity for Computational Effects
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BMCBI
2010
141views more  BMCBI 2010»
15 years 4 months ago
CIG-DB: the database for human or mouse immunoglobulin and T cell receptor genes available for cancer studies
Background: Immunoglobulin (IG or antibody) and the T-cell receptor (TR) are pivotal proteins in the immune system of higher organisms. In cancer immunotherapy, the immune respons...
Yoji Nakamura, Tomoyoshi Komiyama, Motoki Furue, T...
BMCBI
2008
208views more  BMCBI 2008»
15 years 4 months ago
GraphFind: enhancing graph searching by low support data mining techniques
Background: Biomedical and chemical databases are large and rapidly growing in size. Graphs naturally model such kinds of data. To fully exploit the wealth of information in these...
Alfredo Ferro, Rosalba Giugno, Misael Mongiov&igra...
BMCBI
2007
216views more  BMCBI 2007»
15 years 4 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
JACM
2008
91views more  JACM 2008»
15 years 4 months ago
On the minimization of XPath queries
XML queries are usually expressed by means of XPath expressions identifying portions of the selected documents. An XPath expression defines a way of navigating an XML tree and ret...
Sergio Flesca, Filippo Furfaro, Elio Masciari
CORR
2007
Springer
144views Education» more  CORR 2007»
15 years 4 months ago
Optimization of Information Rate Upper and Lower Bounds for Channels with Memory
—We consider the problem of minimizing upper bounds and maximizing lower bounds on information rates of stationary and ergodic discrete-time channels with memory. The channels we...
Parastoo Sadeghi, Pascal O. Vontobel, Ramtin Shams