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» Repairing Structurally Complex Data
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BMCBI
2008
121views more  BMCBI 2008»
13 years 10 months ago
Modularization of biochemical networks based on classification of Petri net t-invariants
Background: Structural analysis of biochemical networks is a growing field in bioinformatics and systems biology. The availability of an increasing amount of biological data from ...
Eva Grafahrend-Belau, Falk Schreiber, Monika Heine...
CLUSTER
2005
IEEE
14 years 3 months ago
Fast Query Processing by Distributing an Index over CPU Caches
Data intensive applications on clusters often require requests quickly be sent to the node managing the desired data. In many applications, one must look through a sorted tree str...
Xiaoqin Ma, Gene Cooperman
COMPGEOM
2005
ACM
14 years 7 days ago
Cache-oblivious r-trees
We develop a cache-oblivious data structure for storing a set S of N axis-aligned rectangles in the plane, such that all rectangles in S intersecting a query rectangle or point ca...
Lars Arge, Mark de Berg, Herman J. Haverkort
BMCBI
2008
132views more  BMCBI 2008»
13 years 10 months ago
The Average Mutual Information Profile as a Genomic Signature
Background: Occult organizational structures in DNA sequences may hold the key to understanding functional and evolutionary aspects of the DNA molecule. Such structures can also p...
Mark Bauer, Sheldon M. Schuster, Khalid Sayood
PPOPP
2009
ACM
14 years 10 months ago
Atomic quake: using transactional memory in an interactive multiplayer game server
Transactional Memory (TM) is being studied widely as a new technique for synchronizing concurrent accesses to shared memory data structures for use in multi-core systems. Much of ...
Adrián Cristal, Eduard Ayguadé, Fera...