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ALMOB
2006
109views more  ALMOB 2006»
13 years 8 months ago
A novel functional module detection algorithm for protein-protein interaction networks
Background: The sparse connectivity of protein-protein interaction data sets makes identification of functional modules challenging. The purpose of this study is to critically eva...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
ENTCS
2008
88views more  ENTCS 2008»
13 years 8 months ago
Behavior-Preserving Simulation-to-Animation Model and Rule Transformations
In the framework of graph transformation, simulation rules define the operational behavior of visual models. Moreover, it has been shown already how to construct animation rules f...
Claudia Ermel, Hartmut Ehrig
BMCBI
2006
182views more  BMCBI 2006»
13 years 8 months ago
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila
Background: Biological processes are mediated by networks of interacting genes and proteins. Efforts to map and understand these networks are resulting in the proliferation of int...
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jod...
BMCBI
2007
202views more  BMCBI 2007»
13 years 8 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
IJFCS
2006
110views more  IJFCS 2006»
13 years 8 months ago
Sat-based Model Checking for Region Automata
For successful software verification, model checkers must be capable of handling a large number of program variables. Traditional, BDD-based model checking is deficient in this re...
Fang Yu, Bow-Yaw Wang