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LNCS
1993
14 years 2 months ago
Multimedia Database Systems
– In the past few years considerable demand for user oriented multimedia information systems has developed. These systems must provide a rich set of functionality so that new, co...
Arif Ghafoor, P. Bruce Berra
RECOMB
2008
Springer
14 years 10 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
RECOMB
2006
Springer
14 years 10 months ago
A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric
The Robinson-Foulds (RF) metric is the measure most widely used in comparing phylogenetic trees; it can be computed in linear time using Day's algorithm. When faced with the n...
Nicholas D. Pattengale, Bernard M. E. Moret
IPPS
2009
IEEE
14 years 4 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
BICOB
2009
Springer
14 years 4 months ago
Generalized Binary Tanglegrams: Algorithms and Applications
Several applications require the joint display of two phylogenetic trees whose leaves are matched by inter-tree edges. This issue arises, for example, when comparing gene trees and...
Mukul S. Bansal, Wen-Chieh Chang 0002, Oliver Eule...