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» Retrieval of 3D protein structures
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RECOMB
2009
Springer
14 years 9 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
BIOCOMP
2008
13 years 10 months ago
Inverse protein folding in 3D hexagonal prism lattice under HP model
Alireza Hadj Khodabakhshi, Ján Manuch, Aras...
BMCBI
2004
208views more  BMCBI 2004»
13 years 8 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
WABI
2009
Springer
130views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions
It becomes more and more important to search for similar structures from molecular 3-D structure databases in the structural biology of the post genomic era. Two molecules are said...
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
APBC
2004
126views Bioinformatics» more  APBC 2004»
13 years 10 months ago
Informative 3D Visualization of Multiple Protein Structures
With the continued growth of three dimensional structural information databases comes a corresponding increase in interest in this data for the study of new sequences and an ever-...
Paulo Lai, Warren Kaplan, W. Bret Church, Raymond ...