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HIPC
2009
Springer
13 years 5 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
ICDE
2003
IEEE
146views Database» more  ICDE 2003»
14 years 9 months ago
Distance Based Indexing for String Proximity Search
In many database applications involving string data, it is common to have near neighbor queries (asking for strings that are similar to a query string) or nearest neighbor queries...
Jai Macker, Murat Tasan, Süleyman Cenk Sahina...
VIS
2009
IEEE
238views Visualization» more  VIS 2009»
14 years 8 months ago
An Interactive Visualization Tool for Multi-channel Confocal Microscopy Data in Neurobiology Research
Confocal microscopy is widely used in neurobiology for studying the three-dimensional structure of the nervous system. Confocal image data are often multi-channel, with each channe...
Yong Wan, Hideo Otsuna, Chi-Bin Chien, Charles ...
POPL
2008
ACM
14 years 8 months ago
Systems biology, models, and concurrency
Models will play a central role in the representation, storage, manipulation, and communication of knowledge in systems biology. Models capable of fulfilling such a role will like...
Walter Fontana
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 2 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada