Abstract--As multicore processors are deployed in mainstream computing, the need for software tools to help parallelize programs is increasing dramatically. Data-dependence profili...
As the size of FPGA devices grows following Moore’s law, it becomes possible to put a complete manycore system onto a single FPGA chip. The centralized memory hierarchy on typica...
Sen Ma, Miaoqing Huang, Eugene Cartwright, David L...
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...
Recently, energy has become an important issue in highperformance computing. For example, supercomputers that have energy in mind, such as BlueGene/L, have been built; the idea is...
Vincent W. Freeh, Feng Pan, Nandini Kappiah, David...