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» Searching on the Secondary Structure of Protein Sequences
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NAR
2008
91views more  NAR 2008»
13 years 7 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
RECOMB
2006
Springer
14 years 7 months ago
A Study of Accessible Motifs and RNA Folding Complexity
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Zi...
BMCBI
2007
102views more  BMCBI 2007»
13 years 7 months ago
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Background: Homology is a key concept in both evolutionary biology and genomics. Detection of homology is crucial in fields like the functional annotation of protein sequences and...
Jos Boekhorst, Berend Snel
ER
2009
Springer
111views Database» more  ER 2009»
14 years 1 months ago
A New Point Access Method Based on Wavelet Trees
Abstract. The development of index structures that allow ecient retrieval of spatial objects has been a topic of interest in the last decades. Most of these structures have been d...
Nieves R. Brisaboa, Miguel Rodríguez Luaces...
CORR
2010
Springer
157views Education» more  CORR 2010»
13 years 7 months ago
Efficient Clustering with Limited Distance Information
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model ...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...