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» Semantic Coherence Scoring Using an Ontology
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BMCBI
2007
123views more  BMCBI 2007»
13 years 6 months ago
GO for gene documents
Annotating genes and their products with Gene Ontology codes is an important area of research. One approach for doing this is to use the information available about these genes in...
Padmini Srinivasan, Xin Ying Qiu
TKDE
2010
284views more  TKDE 2010»
13 years 5 months ago
Unsupervised Semantic Similarity Computation between Terms Using Web Documents
Abstract— In this work, web-based metrics for semantic similarity computation between words or terms are presented and compared with the state-of-the-art. Starting from the funda...
Elias Iosif, Alexandros Potamianos
BMCBI
2008
170views more  BMCBI 2008»
13 years 6 months ago
Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data
Background: Researchers interested in analysing the expression patterns of functionally related genes usually hope to improve the accuracy of their results beyond the boundaries o...
Tao Xu, LinFang Du, Yan Zhou
JBI
2007
120views Bioinformatics» more  JBI 2007»
13 years 6 months ago
Measures of semantic similarity and relatedness in the biomedical domain
Measures of semantic similarity between concepts are widely used in Natural Language Processing. In this article, we show how six existing domain-independent measures can be adapt...
Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Pa...
BMCBI
2006
207views more  BMCBI 2006»
13 years 6 months ago
A new measure for functional similarity of gene products based on Gene Ontology
Background: Gene Ontology (GO) is a standard vocabulary of functional terms and allows for coherent annotation of gene products. These annotations provide a basis for new methods ...
Andreas Schlicker, Francisco S. Domingues, Jö...