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» Semantic Mining and Analysis of Gene Expression Data
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TNN
2008
105views more  TNN 2008»
15 years 6 months ago
Generalized Linear Discriminant Analysis: A Unified Framework and Efficient Model Selection
Abstract--High-dimensional data are common in many domains, and dimensionality reduction is the key to cope with the curse-of-dimensionality. Linear discriminant analysis (LDA) is ...
Shuiwang Ji, Jieping Ye
BMCBI
2008
138views more  BMCBI 2008»
15 years 6 months ago
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
Background: Most existing transcriptional databases like Comprehensive Systems-Biology Database (CSB.DB) and Arabidopsis Microarray Database and Analysis Toolbox (GENEVESTIGATOR) ...
Arun Rawat, Georg J. Seifert, Youping Deng
BMCBI
2010
108views more  BMCBI 2010»
15 years 6 months ago
Error, reproducibility and sensitivity : a pipeline for data processing of Agilent oligonucleotide expression arrays
Background: Expression microarrays are increasingly used to obtain large scale transcriptomic information on a wide range of biological samples. Nevertheless, there is still much ...
Benjamin Chain, Helen Bowen, John Hammond, Wilfrie...
NAACL
2007
15 years 7 months ago
Extracting Appraisal Expressions
Sentiment analysis seeks to characterize opinionated or evaluative aspects of natural language text. We suggest here that appraisal expression extraction should be viewed as a fun...
Kenneth Bloom, Navendu Garg, Shlomo Argamon
177
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BMCBI
2007
148views more  BMCBI 2007»
15 years 6 months ago
Evaluation of gene-expression clustering via mutual information distance measure
Background: The definition of a distance measure plays a key role in the evaluation of different clustering solutions of gene expression profiles. In this empirical study we compa...
Ido Priness, Oded Maimon, Irad E. Ben-Gal