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» Semantic Mining and Analysis of Gene Expression Data
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BMCBI
2010
96views more  BMCBI 2010»
13 years 9 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
CIKM
2008
Springer
13 years 11 months ago
A system for finding biological entities that satisfy certain conditions from texts
Finding biological entities (such as genes or proteins) that satisfy certain conditions from texts is an important and challenging task in biomedical information retrieval and tex...
Wei Zhou, Clement T. Yu, Weiyi Meng
BMCBI
2007
107views more  BMCBI 2007»
13 years 9 months ago
Linking microarray reporters with protein functions
Background: The analysis of microarray experiments requires accurate and up-to-date functional annotation of the microarray reporters to optimize the interpretation of the biologi...
Stan Gaj, Arie van Erk, Rachel I. M. van Haaften, ...
ECML
2001
Springer
14 years 1 months ago
Mining the Web for Synonyms: PMI-IR versus LSA on TOEFL
Abstract. This paper presents a simple unsupervised learning algorithm for recognizing synonyms, based on statistical data acquired by querying a Web search engine. The algorithm, ...
Peter D. Turney
NAR
1998
73views more  NAR 1998»
13 years 8 months ago
Identification and characterization of the RAD51 gene from the ciliate Tetrahymena thermophila
The RAD51 gene is a eukaryotic homolog of recA, a critical component in homologous recombination and DNA repair pathways in Escherichia coli. We have cloned the RAD51 homolog from...
Colin Campbell, Daniel P. Romero