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» Separating Complexity Classes Using Structural Properties
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BMCBI
2007
102views more  BMCBI 2007»
13 years 10 months ago
Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
Background: The number of algorithms available to predict ligand-protein interactions is large and ever-increasing. The number of test cases used to validate these methods is usua...
Luis A. Diago, Persy Morell, Longendri Aguilera, E...
OOPSLA
1998
Springer
14 years 2 months ago
Role Model Based Framework Design and Integration
Today, any large object-oriented software system is built using frameworks. Yet, designing frameworks and defining their interaction with clients remains a difficult task. A prima...
Dirk Riehle, Thomas R. Gross
INFORMATICALT
2007
127views more  INFORMATICALT 2007»
13 years 10 months ago
Composition of Loop Modules in the Structural Blanks Approach to Programming with Recurrences: A Task of Synthesis of Nested Loo
The paper presents, first, the Structural Blanks (SB) approach, then a method to compose loop programs. SB is an approach for expressing computations based on recurrence relations...
Vytautas Cyras
GECCO
2004
Springer
105views Optimization» more  GECCO 2004»
14 years 3 months ago
Softening the Structural Difficulty in Genetic Programming with TAG-Based Representation and Insertion/Deletion Operators
In a series of papers [3-8], Daida et. al. highlighted the difficulties posed to Genetic Programming (GP) by the complexity of the structural search space, and attributed the probl...
Nguyen Xuan Hoai, Robert I. McKay
BMCBI
2008
131views more  BMCBI 2008»
13 years 10 months ago
K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space
Background: Kernel-based classification and regression methods have been successfully applied to modelling a wide variety of biological data. The Kernel-based Orthogonal Projectio...
Max Bylesjö, Mattias Rantalainen, Jeremy K. N...