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» Sequence alignment with tandem duplication
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NAR
2002
80views more  NAR 2002»
13 years 8 months ago
Wanda: a database of duplicated fish genes
Comparative genomics has shown that ray-finned fish (Actinopterygii) contain more copies of many genes than other vertebrates. A large number of these additional genes appear to h...
Yves Van de Peer, John Shawe-Taylor, Jayabalan Jos...
CIKM
2011
Springer
12 years 9 months ago
Partial duplicate detection for large book collections
A framework is presented for discovering partial duplicates in large collections of scanned books with optical character recognition (OCR) errors. Each book in the collection is r...
Ismet Zeki Yalniz, Ethem F. Can, R. Manmatha
COMPLIFE
2005
Springer
14 years 2 months ago
Protein Annotation by Secondary Structure Based Alignments (PASSTA)
Abstract. Most software tools in homology recognition on proteins answer only a few specific questions, often leaving not much room for the interpretation of the results. We devel...
Constantin Bannert, Jens Stoye
BMCBI
2007
149views more  BMCBI 2007»
13 years 9 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
BMCBI
2010
120views more  BMCBI 2010»
13 years 9 months ago
Estimating true evolutionary distances under rearrangements, duplications, and losses
Background: The rapidly increasing availability of whole-genome sequences has enabled the study of whole-genome evolution. Evolutionary mechanisms based on genome rearrangements h...
Yu Lin, Vaibhav Rajan, Krister M. Swenson, Bernard...