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IPPS
2010
IEEE
13 years 6 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
ICDE
2007
IEEE
127views Database» more  ICDE 2007»
14 years 10 months ago
Supporting Streaming Updates in an Active Data Warehouse
Active Data Warehousing has emerged as an alternative to conventional warehousing practices in order to meet the high demand of applications for up-to-date information. In a nutsh...
Neoklis Polyzotis, Spiros Skiadopoulos, Panos Vass...
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 3 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
IPPS
2007
IEEE
14 years 3 months ago
Optimizing the Fast Fourier Transform on a Multi-core Architecture
The rapid revolution in microprocessor chip architecture due to multicore technology is presenting unprecedented challenges to the application developers as well as system softwar...
Long Chen, Ziang Hu, Junmin Lin, Guang R. Gao
DIMVA
2008
13 years 9 months ago
Data Space Randomization
Over the past several years, US-CERT advisories, as well as most critical updates from software vendors, have been due to memory corruption vulnerabilities such as buffer overflo...
Sandeep Bhatkar, R. Sekar