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» Similarities of Ordered Gene Lists
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BMCBI
2007
138views more  BMCBI 2007»
13 years 11 months ago
A systematic approach to detecting transcription factors in response to environmental stresses
Background: Eukaryotic cells have developed mechanisms to respond to external environmental or physiological changes (stresses). In order to increase the activities of stress-prot...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
RECOMB
2004
Springer
14 years 11 months ago
The Statistical Significance of Max-Gap Clusters
Identifying gene clusters, genomic regions that share local similarities in gene organization, is a prerequisite for many different types of genomic analyses, including operon pred...
Rose Hoberman, David Sankoff, Dannie Durand
BMCBI
2008
120views more  BMCBI 2008»
13 years 11 months ago
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
Pere Puigbò, Ignacio G. Bravo, Santiago Gar...
AIED
2005
Springer
14 years 4 months ago
Realizing Adaptive Questions and Answers for ICALL Systems
Language training systems that provide learners adaptive questions on the contents of stories require several capabilities such as semantic analysis, automated question generation ...
Hidenobu Kunichika, Minoru Urushima, Tsukasa Hiras...
BMCBI
2006
108views more  BMCBI 2006»
13 years 11 months ago
SPIDer: Saccharomyces protein-protein interaction database
Background: Since proteins perform their functions by interacting with one another and with other biomolecules, reconstructing a map of the protein-protein interactions of a cell,...
Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zho...