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TC
2010
13 years 6 months ago
Scalable Node-Level Computation Kernels for Parallel Exact Inference
—In this paper, we investigate data parallelism in exact inference with respect to arbitrary junction trees. Exact inference is a key problem in exploring probabilistic graphical...
Yinglong Xia, Viktor K. Prasanna
BMCBI
2010
89views more  BMCBI 2010»
13 years 7 months ago
Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays
Background: Microarray measurements are susceptible to a variety of experimental artifacts, some of which give rise to systematic biases that are spatially dependent in a unique w...
High-Seng Chai, Terry M. Therneau, Kent R. Bailey,...
BMCBI
2007
111views more  BMCBI 2007»
13 years 7 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
ICCS
2009
Springer
13 years 5 months ago
Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures
The Jaccard/Tanimoto coefficient is an important workload, used in a large variety of problems including drug design fingerprinting, clustering analysis, similarity web searching a...
Vipin Sachdeva, Douglas M. Freimuth, Chris Mueller
BIOINFORMATICS
2006
92views more  BIOINFORMATICS 2006»
13 years 7 months ago
What should be expected from feature selection in small-sample settings
Motivation: High-throughput technologies for rapid measurement of vast numbers of biological variables offer the potential for highly discriminatory diagnosis and prognosis; howev...
Chao Sima, Edward R. Dougherty