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BMCBI
2007
113views more  BMCBI 2007»
15 years 6 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar
BMCBI
2010
123views more  BMCBI 2010»
15 years 1 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
PADL
2004
Springer
15 years 11 months ago
Symbolic Execution of Behavioral Requirements
Message Sequence Charts (MSC) have traditionally been used as a weak form of behavioral requirements in software design; they denote scenarios which may happen. Live Sequence Chart...
Tao Wang, Abhik Roychoudhury, Roland H. C. Yap, S....
BIBE
2007
IEEE
129views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
Statistial Analysis of nucleosome occupancy and histone modification data
Abstract-- In eukaryotic cells, genomic DNAs wrap around beadlike molecules, called nucleosomes, so as to pack more compactly in the nucleus of the cell. The nucleosome is made up ...
Guo-Cheng Yuan, Jun S. Liu
AAAI
2000
15 years 7 months ago
Recognizing End-User Transactions in Performance Management
Providing good quality of service (e.g., low response times) in distributed computer systems requires measuring enduser perceptions of performance. Unfortunately, such measures ar...
Joseph L. Hellerstein, T. S. Jayram, Irina Rish