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BMCBI
2002
133views more  BMCBI 2002»
13 years 7 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
MICAI
2007
Springer
14 years 1 months ago
An EM Algorithm to Learn Sequences in the Wavelet Domain
The wavelet transform has been used for feature extraction in many applications of pattern recognition. However, in general the learning algorithms are not designed taking into acc...
Diego H. Milone, Leandro E. Di Persia
ISMB
1993
13 years 8 months ago
Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families
A Bayesian method for estimating the amino acid distributions in the states of a hidden Markov model (HMM) for a protein familyor the columns of a multiple alignment of that famil...
Michael Brown, Richard Hughey, Anders Krogh, I. Sa...
UAI
2004
13 years 8 months ago
Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences
We present a new method for nonlinear prediction of discrete random sequences under minimal structural assumptions. We give a mathematical construction for optimal predictors of s...
Cosma Rohilla Shalizi, Kristina Lisa Shalizi
NIPS
2003
13 years 8 months ago
Inferring State Sequences for Non-linear Systems with Embedded Hidden Markov Models
We describe a Markov chain method for sampling from the distribution of the hidden state sequence in a non-linear dynamical system, given a sequence of observations. This method u...
Radford M. Neal, Matthew J. Beal, Sam T. Roweis