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BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
BMCBI
2007
169views more  BMCBI 2007»
13 years 7 months ago
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...
Ibtissem Grissa, Gilles Vergnaud, Christine Pource...
BMCBI
2007
114views more  BMCBI 2007»
13 years 7 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...
FGCS
2007
146views more  FGCS 2007»
13 years 7 months ago
Distributed medical images analysis on a Grid infrastructure
In this paper medical applications on a Grid infrastructure, the MAGIC-5 Project, are presented and discussed. MAGIC-5 aims at developing Computer Aided Detection (CADe) software ...
Roberto Bellotti, Piergiorgio Cerello, S. Tangaro,...
SP
2008
IEEE
138views Security Privacy» more  SP 2008»
13 years 7 months ago
A performance tuning methodology with compiler support
We have developed an environment, based upon robust, existing, open source software, for tuning applications written using MPI, OpenMP or both. The goal of this effort, which inte...
Oscar Hernandez, Barbara M. Chapman, Haoqiang Jin