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BMCBI
2007
152views more  BMCBI 2007»
13 years 7 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
DAC
2003
ACM
14 years 8 months ago
Automated synthesis of efficient binary decoders for retargetable software toolkits
A binary decoder is a common component of software development tools such as instruction set simulators, disassemblers and debuggers. The efficiency of the decoder can have a sign...
Wei Qin, Sharad Malik
SODA
2003
ACM
167views Algorithms» more  SODA 2003»
13 years 8 months ago
Counting inversions in lists
In a recent paper, Ajtai et al. [1] give a streaming algorithm to count the number of inversions in a stream Ä ¾ Ñ Ò using two passes and Ç´¯ ½ ÔÒÐÓ Ò´ÐÓ Ñ·ÐÓ...
Anupam Gupta, Francis Zane
BMCBI
2010
135views more  BMCBI 2010»
13 years 7 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
GECCO
2005
Springer
140views Optimization» more  GECCO 2005»
14 years 1 months ago
Intransitivity revisited coevolutionary dynamics of numbers games
Relative fitness, or “evaluation by tests” is one of the building blocks of coevolution: the only fitness information available is a comparison with other individuals in a p...
Pablo Funes, Enrique Pujals