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» Stochastic pairwise alignments
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BMCBI
2007
156views more  BMCBI 2007»
13 years 7 months ago
Accuracy of structure-based sequence alignment of automatic methods
Background: Accurate sequence alignments are essential for homology searches and for building three-dimensional structural models of proteins. Since structure is better conserved ...
Changhoon Kim, Byungkook Lee
BMCBI
2006
150views more  BMCBI 2006»
13 years 7 months ago
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between clos
Background: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. Howev...
Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
IJBRA
2006
111views more  IJBRA 2006»
13 years 7 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
ACL
2006
13 years 9 months ago
Stochastic Iterative Alignment for Machine Translation Evaluation
A number of metrics for automatic evaluation of machine translation have been proposed in recent years, with some metrics focusing on measuring the adequacy of MT output, and othe...
Ding Liu, Daniel Gildea
NLE
2007
180views more  NLE 2007»
13 years 7 months ago
Segmentation and alignment of parallel text for statistical machine translation
We address the problem of extracting bilingual chunk pairs from parallel text to create training sets for statistical machine translation. We formulate the problem in terms of a s...
Yonggang Deng, Shankar Kumar, William Byrne