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NAR
2006
164views more  NAR 2006»
13 years 9 months ago
FISH - family identification of sequence homologues using structure anchored hidden Markov models
The FISH server is highly accurate in identifying the family membership of domains in a query protein sequence, even in the case of very low sequence identities to known homologue...
Jeanette Tångrot, Lixiao Wang, Bo Kågs...
ADC
2007
Springer
125views Database» more  ADC 2007»
14 years 4 months ago
Building a Disordered Protein Database: A Case Study in Managing Biological Data
A huge diversity of biological databases is available via the Internet, but many of these databases have been developed in an ad hoc manner rather than in accordance with any data...
Arran D. Stewart, Xiuzhen Zhang
ICPR
2004
IEEE
14 years 11 months ago
Structural Graph Matching With Polynomial Bounds On Memory and on Worst-Case Effort
A new method of structural graph matching is introduced and compared against an existing method and against the maximum common subgraph. The method is approximate with polynomial ...
Fred W. DePiero
BMCBI
2010
189views more  BMCBI 2010»
13 years 10 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
ITC
2003
IEEE
327views Hardware» more  ITC 2003»
14 years 3 months ago
Case Study - Using STIL as Test Pattern Language
This paper describes the implementation of a test pattern language using STIL [1], the IEEE Standard Test Interface Language (1450-1999), in a next generation, open architecture A...
Daniel Fan, Steve Roehling, Rusty Carruth