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PEPM
1997
ACM
14 years 2 months ago
Annotation-Directed Run-Time Specialization in C
We present the design of a dynamic compilation system for C. Directed by a few declarative user annotations specifying where and on what dynamic compilation is to take place, a bi...
Brian Grant, Markus Mock, Matthai Philipose, Craig...
BMCBI
2007
168views more  BMCBI 2007»
13 years 10 months ago
Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks
Background: Uncovering cellular roles of a protein is a task of tremendous importance and complexity that requires dedicated experimental work as well as often sophisticated data ...
Nikolai Daraselia, Anton Yuryev, Sergei Egorov, Il...
BMCBI
2006
152views more  BMCBI 2006»
13 years 10 months ago
Amplification of the Gene Ontology annotation of Affymetrix probe sets
Background: The annotations of Affymetrix DNA microarray probe sets with Gene Ontology terms are carefully selected for correctness. This results in very accurate but incomplete a...
Enrique M. Muro, Carolina Perez-Iratxeta, Miguel A...
BIBE
2007
IEEE
142views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
An HV-SVM Classifier to Infer TF-TF Interactions Using Protein Domains and GO Annotations
—Interactions between transcription factors (TFs) are necessary for deciphering the complex mechanisms of transcription regulation in eukaryotes. In this paper, we proposed a nov...
Xiaoli Li, Jun-Xiang Lee, Bharadwaj Veeravalli, Se...
LREC
2008
134views Education» more  LREC 2008»
13 years 11 months ago
Dependency-Based Relation Mining for Biomedical Literature
We describe techniques for the automatic detection of relationships among domain entities (e.g. genes, proteins, diseases) mentioned in the biomedical literature. Our approach is ...
Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand,...