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» Synthesis of Mechanical Structures Using a Genetic Algorithm
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COMPGEOM
2005
ACM
13 years 9 months ago
Dynamic maintenance of molecular surfaces under conformational changes
We present an efficient algorithm for maintaining the boundary and surface area of protein molecules as they undergo conformational changes. We also describe a robust implementati...
Eran Eyal, Dan Halperin
BMCBI
2007
89views more  BMCBI 2007»
13 years 7 months ago
Comparing segmentations by applying randomization techniques
Background: There exist many segmentation techniques for genomic sequences, and the segmentations can also be based on many different biological features. We show how to evaluate ...
Niina Haiminen, Heikki Mannila, Evimaria Terzi
NIPS
2001
13 years 9 months ago
Convolution Kernels for Natural Language
We describe the application of kernel methods to Natural Language Processing (NLP) problems. In many NLP tasks the objects being modeled are strings, trees, graphs or other discre...
Michael Collins, Nigel Duffy
ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
13 years 5 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
GECCO
2008
Springer
239views Optimization» more  GECCO 2008»
13 years 8 months ago
Multiobjective design of operators that detect points of interest in images
In this paper, a multiobjective (MO) learning approach to image feature extraction is described, where Pareto-optimal interest point (IP) detectors are synthesized using genetic p...
Leonardo Trujillo, Gustavo Olague, Evelyne Lutton,...