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» Techniques and tools for dynamic optimization
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WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
14 years 1 months ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
IPPS
2000
IEEE
14 years 16 days ago
Dynamic Data Layouts for Cache-Conscious Factorization of DFT
Effective utilization of cache memories is a key factor in achieving high performance in computing the Discrete Fourier Transform (DFT). Most optimizationtechniques for computing ...
Neungsoo Park, Dongsoo Kang, Kiran Bondalapati, Vi...
FPGA
2005
ACM
97views FPGA» more  FPGA 2005»
14 years 1 months ago
Techniques for synthesizing binaries to an advanced register/memory structure
Recent works demonstrate several benefits of synthesizing software binaries onto FPGA hardware, including incorporating hardware design into established software tool flows with m...
Greg Stitt, Zhi Guo, Walid A. Najjar, Frank Vahid
HPDC
1997
IEEE
14 years 10 days ago
Packing Messages as a Tool for Boosting the Performance of Total Ordering Protocols
This paper compares the throughput and latency of four protocols that provide total ordering. Two of these protocols are measured with and without message packing. We used a techn...
Roy Friedman, Robbert van Renesse
FGCS
2006
119views more  FGCS 2006»
13 years 8 months ago
Simulation tools to study a distributed shared memory for clusters of symmetric multiprocessors
Distributed shared memory (DSM) systems have become popular as a means of utilizing clusters of computers for solving large applications. We have developed a high-performance DSM,...
Darshan Thaker, Vipin Chaudhary