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WSC
1998
13 years 10 months ago
The Use of Simulation in the Planning of the Dutch Railway Services
The design of a quality timetable for the Dutch Railways is a complex task, because of the characteristics of the railway services. The complexity of the network and the heavily i...
Jurjen S. Hooghiemstra, Maurice J. G. Tunisse
BMCBI
2008
89views more  BMCBI 2008»
13 years 9 months ago
Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy
Background: Simulating the major molecular events inside an Escherichia coli cell can lead to a very large number of reactions that compose its overall behaviour. Not only should ...
Marco A. J. Iafolla, Guang Qiang Dong, David R. Mc...
BMCBI
2007
102views more  BMCBI 2007»
13 years 9 months ago
qPIPSA: Relating enzymatic kinetic parameters and interaction fields
Background: The simulation of metabolic networks in quantitative systems biology requires the assignment of enzymatic kinetic parameters. Experimentally determined values are ofte...
Razif R. Gabdoulline, Matthias Stein, Rebecca C. W...
KDD
2001
ACM
150views Data Mining» more  KDD 2001»
14 years 9 months ago
Empirical bayes screening for multi-item associations
This paper considers the framework of the so-called "market basket problem", in which a database of transactions is mined for the occurrence of unusually frequent item s...
William DuMouchel, Daryl Pregibon
FM
2009
Springer
138views Formal Methods» more  FM 2009»
14 years 3 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...