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» The Distribution of Genomic Distance between Random Genomes
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ISPDC
2007
IEEE
14 years 1 months ago
Whole Genome Comparison on a Network of Workstations
Whole genome comparison consists of comparing or aligning genome sequences with a goal of finding similarities between them. Previously we have shown how SIMD Extensions used in ...
Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, ...
IPPS
2002
IEEE
14 years 18 days ago
Aligning Two Fragmented Sequences
Upon completion of the human and mouse genome sequences, world-wide sequencing capacity will turn to other complex organisms. Current strategies call for many of these genomes to ...
Vamsi Veeramachaneni, Piotr Berman, Webb Miller
CSB
2005
IEEE
109views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Patterns of Gene Deletion following Genome Duplication in Yeast
Whole genome duplication (WGD) is followed by massive duplicate deletion that reorganizes gene adjacencies. We compare the deletion patterns and adjacency reorganization following...
Jake K. Byrnes, Wen-Hsiung Li
DAM
2010
101views more  DAM 2010»
13 years 7 months ago
On the distribution of distances between specified nodes in increasing trees
We study the quantity distance between node j and node n in a random tree of size n for increasing tree families. We give closed formul
Markus Kuba, Alois Panholzer
BMCBI
2007
154views more  BMCBI 2007»
13 years 7 months ago
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Background: Identifying syntenic regions, i.e., blocks of genes or other markers with evolutionary conserved order, and quantifying evolutionary relatedness between genomes in ter...
Amit U. Sinha, Jaroslaw Meller