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GCB
2004
Springer
81views Biometrics» more  GCB 2004»
14 years 2 months ago
GoPubMed: ontology-based literature search applied to Gene Ontology and PubMed
Abstract. The biomedical literature grows at a tremendous rate, so that finding the relevant literature is becoming more and more difficult. To address this problem we introduce ...
Ralph Delfs, Andreas Doms, Alexander Kozlenkov, Mi...
JBCB
2010
138views more  JBCB 2010»
13 years 3 months ago
Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
Protein function prediction is an active area of research in bioinformatics. And yet, transfer of annotation on the basis of sequence or structural similarity remains widely used ...
Artem Sokolov, Asa Ben-Hur
BMCBI
2007
94views more  BMCBI 2007»
13 years 8 months ago
False positive reduction in protein-protein interaction predictions using gene ontology annotations
Background: Many crucial cellular operations such as metabolism, signalling, and regulations are based on protein-protein interactions. However, the lack of robust protein-protein...
Mahmood A. Mahdavi, Yen-Han Lin
BMCBI
2007
120views more  BMCBI 2007»
13 years 8 months ago
Quantitative sequence-function relationships in proteins based on gene ontology
Background: The relationship between divergence of amino-acid sequence and divergence of function among homologous proteins is complex. The assumption that homologs share function...
Vineet Sangar, Daniel J. Blankenberg, Naomi Altman...
NAR
2011
235views Computer Vision» more  NAR 2011»
12 years 11 months ago
P2CS: a database of prokaryotic two-component systems
P2CS (http://www.p2cs.org) is a specialized database for prokaryotic two-component systems (TCSs), virtually ubiquitous signalling proteins which regulate a wide range of physiolo...
Mohamed Barakat, Philippe Ortet, David E. Whitwort...