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BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions
Background: Quantitative characterization of the topological characteristics of protein-protein interaction (PPI) networks can enable the elucidation of biological functional modu...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
BMCBI
2005
246views more  BMCBI 2005»
13 years 7 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
14 years 2 months ago
Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases
Background: Similaritysearch in chemical structure databases is an important problem with many applications in chemical genomics, drug design, and efficient chemical probe screeni...
Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald ...
NPIV
1999
ACM
142views Visualization» more  NPIV 1999»
13 years 11 months ago
ALMOST: Exploring Program Traces
We built a tool to visualize and explore program execution traces. Our goal was to help programmers without any prior knowledge of a program, quickly get enough knowledge about it...
Manos Reniers, Steven P. Reis
IMAMS
2007
245views Mathematics» more  IMAMS 2007»
13 years 8 months ago
Discrete Surface Ricci Flow: Theory and Applications
Conformal geometry is in the core of pure mathematics. Conformal structure is more flexible than Riemaniann metric but more rigid than topology. Conformal geometric methods have p...
Miao Jin, Junho Kim, Xianfeng David Gu