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BMCBI
2007
116views more  BMCBI 2007»
13 years 8 months ago
Clustering protein environments for function prediction: finding PROSITE motifs in 3D
Background: Structural genomics initiatives are producing increasing numbers of threedimensional (3D) structures for which there is little functional information. Structure-based ...
Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, G...
BMCBI
2007
115views more  BMCBI 2007»
13 years 8 months ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
BMCBI
2007
163views more  BMCBI 2007»
13 years 8 months ago
A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluati
Background: A huge amount of biomedical textual information has been produced and collected in MEDLINE for decades. In order to easily utilize biomedical information in the free t...
Illhoi Yoo, Xiaohua Hu, Il-Yeol Song
ESWA
2006
195views more  ESWA 2006»
13 years 8 months ago
JavaDON: an open-source expert system shell
The paper describes JavaDON, an open-source expert systems shell based on the OBOA framework for developing intelligent systems. The central idea of the JavaDON project was to mak...
Bojan Tomic, Jelena Jovanovic, Vladan Devedzic
CORR
2007
Springer
100views Education» more  CORR 2007»
13 years 8 months ago
Identifying statistical dependence in genomic sequences via mutual information estimates
Questions of understanding and quantifying the representation and amount of information in organisms have become a central part of biological research, as they potentially hold th...
H. M. Aktulga, I. Kontoyiannis, L. A. Lyznik, Luka...