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» The Inference Based on Molecular Computing
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BMCBI
2008
83views more  BMCBI 2008»
13 years 10 months ago
Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes
Background: Molecular typing methods are commonly used to study genetic relationships among bacterial isolates. Many of these methods have become standardized and produce portable...
Josephine F. Reyes, Andrew R. Francis, Mark M. Tan...
RECOMB
2009
Springer
14 years 10 months ago
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees
Reconciliation between a set of gene trees and a species tree is the most commonly used approach to infer the duplication and loss events in the evolution of gene families, given a...
Cedric Chauve, Nadia El-Mabrouk
BMCBI
2011
13 years 4 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
ICCS
2005
Springer
14 years 3 months ago
Introducing Design Patterns, Graphical User Interfaces and Threads Within the Context of a High Performance Computing Applicatio
The cross fertilization of methods and techniques between different subject areas in the undergraduate curriculum is a challenge, especially at the more advanced levels. This paper...
James Roper, Alistair P. Rendell
OOPSLA
2005
Springer
14 years 3 months ago
Inferring context-free grammars for domain-specific languages
Grammatical inference (or grammar inference) has been applied to various problems in areas such as computational biology, and speech and pattern recognition but its application to...
Faizan Javed