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SDM
2007
SIAM
184views Data Mining» more  SDM 2007»
13 years 11 months ago
Mining Naturally Smooth Evolution of Clusters from Dynamic Data
Many clustering algorithms have been proposed to partition a set of static data points into groups. In this paper, we consider an evolutionary clustering problem where the input d...
Yi Wang, Shi-Xia Liu, Jianhua Feng, Lizhu Zhou
ISMB
2004
13 years 11 months ago
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
Zasha Weinberg, Walter L. Ruzzo
BMCBI
2008
137views more  BMCBI 2008»
13 years 10 months ago
A dynamic Bayesian network approach to protein secondary structure prediction
Background: Protein secondary structure prediction method based on probabilistic models such as hidden Markov model (HMM) appeals to many because it provides meaningful informatio...
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She
BMCBI
2007
98views more  BMCBI 2007»
13 years 9 months ago
Duration learning for analysis of nanopore ionic current blockades
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties, with potential implications ...
Alexander G. Churbanov, Carl Baribault, Stephen Wi...
BMCBI
2002
108views more  BMCBI 2002»
13 years 9 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy