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CANDC
2004
ACM
13 years 9 months ago
iProLINK: an integrated protein resource for literature mining
The exponential growth of large-scale molecular sequence data and of the PubMed scientific literature has prompted active research in biological literature mining and information ...
Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hon...
FGCS
2007
107views more  FGCS 2007»
13 years 9 months ago
Algorithmic re-structuring and data replication for protein structure comparison on a GRID
This paper describes a major restructuring of PROuST, a method for protein structure comparison, for an efficient porting to the Grid. PROuST consists of different components: an...
Giovanni Ciriello, M. Comin, Concettina Guerra
VLDB
2002
ACM
161views Database» more  VLDB 2002»
13 years 9 months ago
BANKS: Browsing and Keyword Searching in Relational Databases
The BANKS system enables keyword-based search on databases, together with data and schema browsing. BANKS enables users to extract information in a simple manner without any knowl...
B. Aditya, Gaurav Bhalotia, Soumen Chakrabarti, Ar...
BMCBI
2005
97views more  BMCBI 2005»
13 years 9 months ago
Comparative mapping of sequence-based and structure-based protein domains
Background: Protein domains have long been an ill-defined concept in biology. They are generally described as autonomous folding units with evolutionary and functional independenc...
Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, S...
NAR
2011
223views Computer Vision» more  NAR 2011»
13 years 22 days ago
KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions
KUPS (The University of Kansas Proteomics Service) provides high-quality protein–protein interaction (PPI) data for researchers developing and evaluating computational models fo...
Xue-wen Chen, Jong Cheol Jeong, Patrick Dermyer