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» The ed-tree: An Index for Large DNA Sequence Databases
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BMCBI
2008
111views more  BMCBI 2008»
13 years 9 months ago
VisualRepbase: an interface for the study of occurrences of transposable element families
Background: Repbase is a reference database of eukaryotic repetitive DNA, which includes prototypic sequences of repeats and basic information described in annotations. Repbase al...
Sébastien Tempel, Matthew Jurka, Jerzy Jurk...
KDD
2009
ACM
169views Data Mining» more  KDD 2009»
14 years 3 months ago
On burstiness-aware search for document sequences
As the number and size of large timestamped collections (e.g. sequences of digitized newspapers, periodicals, blogs) increase, the problem of efficiently indexing and searching su...
Theodoros Lappas, Benjamin Arai, Manolis Platakis,...
BMCBI
2010
145views more  BMCBI 2010»
13 years 9 months ago
Clustering metagenomic sequences with interpolated Markov models
Background: Sequencing of environmental DNA (often called metagenomics) has shown tremendous potential to uncover the vast number of unknown microbes that cannot be cultured and s...
David R. Kelley, Steven L. Salzberg
VISUALIZATION
1996
IEEE
14 years 28 days ago
Flexible Information Visualization of Multivariate Data from Biological Sequence Similarity Searches
Information visualization faces challenges presented by the need to represent abstract data and the relationships within the data. Previously, we presented a system for visualizin...
Ed Huai-hsin Chi, John Riedl, Elizabeth Shoop, Joh...
SPIESR
2000
92views Database» more  SPIESR 2000»
13 years 10 months ago
ViBE video database system: an update and further studies
In this paper we extend the shot transition detection component of the ViBE video database system to include gradual scene changes. ViBE Video Indexing and Browsing Environment, a...
Cüneyt M. Taskiran, Charles A. Bouman, Edward...