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» The ed-tree: An Index for Large DNA Sequence Databases
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PETRA
2009
ACM
14 years 2 months ago
Towards faster activity search using embedding-based subsequence matching
Event search is the problem of identifying events or activity of interest in a large database storing long sequences of activity. In this paper, our topic is the problem of identi...
Panagiotis Papapetrou, Paul Doliotis, Vassilis Ath...
BMCBI
2007
114views more  BMCBI 2007»
13 years 7 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...
DEXAW
2006
IEEE
164views Database» more  DEXAW 2006»
13 years 9 months ago
A P2P Integration Architecture for Protein Resources
The availability of a direct pathway from a primary sequence (denovo or DNA derived) to macromolecular structure to biological function using computer-based tools is the ultimate ...
Kajal T. Claypool, Sanjay Kumar Madria
BMCBI
2005
180views more  BMCBI 2005»
13 years 7 months ago
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
Background: The availability of the human genome sequence as well as the large number of physically accessible oligonucleotides, cDNA, and BAC clones across the entire genome has ...
Björn Menten, Filip Pattyn, Katleen De Preter...
VLDB
1994
ACM
149views Database» more  VLDB 1994»
13 years 11 months ago
Qualified Answers That Reflect User Needs and Preferences
This paper introduces a formalism to describe the needs and preferences of database users. Because of the precise formulation of these concepts, we have found an automatic and ver...
Terry Gaasterland, Jorge Lobo