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» Three Improvements to the BLASTP Search of Genome Databases
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EDBT
2008
ACM
161views Database» more  EDBT 2008»
14 years 7 months ago
Load distribution of analytical query workloads for database cluster architectures
Enterprises may have multiple database systems spread across the organization for redundancy or for serving different applications. In such systems, query workloads can be distrib...
Thomas Phan, Wen-Syan Li
BMCBI
2008
106views more  BMCBI 2008»
13 years 7 months ago
An Integrated Korean Biodiversity and Genetic Information Retrieval System
Background: On-line biodiversity information databases are growing quickly and being integrated into general bioinformatics systems due to the advances of fast gene sequencing tec...
Jeongheui Lim, Jong Bhak, Hee-Mock Oh, Chang-Bae K...
BMCBI
2007
134views more  BMCBI 2007»
13 years 7 months ago
PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results
Background: BLAST searches are widely used for sequence alignment. The search results are commonly adopted for various functional and comparative genomics tasks such as annotating...
Ji He, Xinbin Dai, Xuechun Zhao
BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
SIGIR
2012
ACM
11 years 10 months ago
To index or not to index: time-space trade-offs in search engines with positional ranking functions
Positional ranking functions, widely used in web search engines, improve result quality by exploiting the positions of the query terms within documents. However, it is well known ...
Diego Arroyuelo, Senén González, Mau...