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RECOMB
2006
Springer
14 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2004
Springer
14 years 10 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
ICALP
2009
Springer
14 years 10 months ago
Sorting and Selection with Imprecise Comparisons
Abstract. In experimental psychology, the method of paired comparisons was proposed as a means for ranking preferences amongst n elements of a human subject. The method requires pe...
Avinatan Hassidim, Jelani Nelson, Miklós Aj...
ICALP
2009
Springer
14 years 10 months ago
Functional Monitoring without Monotonicity
The notion of distributed functional monitoring was recently introduced by Cormode, Muthukrishnan and Yi [CMY08] to initiate a formal study of the communication cost of certain fu...
Chrisil Arackaparambil, Joshua Brody, Amit Chakrab...
SIGMOD
2009
ACM
132views Database» more  SIGMOD 2009»
14 years 10 months ago
Taming the storage dragon: the adventures of hoTMaN
HoTMaN (HoT-standby MaNager) is a joint research and development project between MySpace and USC Database Laboratory to design and develop a tool to ensure a 24x7 up-time and ease...
Shahram Ghandeharizadeh, Andrew Goodney, Chetan Sh...