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» Towards a theory of events
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BMCBI
2008
107views more  BMCBI 2008»
13 years 7 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2006
123views more  BMCBI 2006»
13 years 7 months ago
An Automated Method for Rapid Identification of Putative Gene Family Members in Plants
Background: Gene duplication events have played a significant role in genome evolution, particularly in plants. Exhaustive searches for all members of a known gene family as well ...
Ronald L. Frank, Ajay Mane, Fikret Erçal
BMCBI
2007
147views more  BMCBI 2007»
13 years 7 months ago
Modeling biochemical transformation processes and information processing with Narrator
Background: Software tools that model and simulate the dynamics of biological processes and systems are becoming increasingly important. Some of these tools offer sophisticated gr...
Johannes J. Mandel, Hendrik Fuß, Niall M. Pa...
RPTEL
2006
75views more  RPTEL 2006»
13 years 7 months ago
A Qualitative Analysis of Collaborative Knowledge Construction through Shared Representations
This paper takes one step towards addressing the question of how activity mediated by shared representations--notations that are manipulated by more than one person during a collab...
Daniel D. Suthers
SIMPRA
2008
131views more  SIMPRA 2008»
13 years 7 months ago
Distributed simulation of DEVS and Cell-DEVS models in CD++ using Web-Services
: DEVS is a Modeling and Simulation formalism that has been widely used to study the dynamics of discrete event systems. Cell-DEVS is a DEVS-based formalism that defines spatial mo...
Gabriel A. Wainer, Rami Madhoun, Khaldoon Al-Zoubi