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» Towards knowledge-based gene expression data mining
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CINQ
2004
Springer
138views Database» more  CINQ 2004»
14 years 2 months ago
Relevancy in Constraint-Based Subgroup Discovery
This chapter investigates subgroup discovery as a task of constraint-based mining of local patterns, aimed at describing groups of individuals with unusual distributional character...
Nada Lavrac, Dragan Gamberger
KDD
2001
ACM
169views Data Mining» more  KDD 2001»
14 years 9 months ago
Hierarchical cluster analysis of SAGE data for cancer profiling
In this paper we present a method for clustering SAGE (Serial Analysis of Gene Expression) data to detect similarities and dissimilarities between different types of cancer on the...
Jörg Sander, Monica C. Sleumer, Raymond T. Ng
RECOMB
2008
Springer
14 years 9 months ago
Accounting for Non-genetic Factors Improves the Power of eQTL Studies
Abstract. The recent availability of large scale data sets profiling single nucleotide polymorphisms (SNPs) and gene expression across different human populations, has directed muc...
Oliver Stegle, Anitha Kannan, Richard Durbin, John...
BMCBI
2008
144views more  BMCBI 2008»
13 years 8 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
BMCBI
2007
171views more  BMCBI 2007»
13 years 8 months ago
An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed,
Background: Identifying relevant research in an ever-growing body of published literature is becoming increasingly difficult. Establishing domain-specific knowledge bases may be a...
Wei Yu, Ajay Yesupriya, Anja Wulf, Junfeng Qu, Mui...