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MICRO
2005
IEEE
126views Hardware» more  MICRO 2005»
14 years 2 months ago
Cost Sensitive Modulo Scheduling in a Loop Accelerator Synthesis System
Scheduling algorithms used in compilers traditionally focus on goals such as reducing schedule length and register pressure or producing compact code. In the context of a hardware...
Kevin Fan, Manjunath Kudlur, Hyunchul Park, Scott ...
JCB
2007
168views more  JCB 2007»
13 years 8 months ago
Fast Molecular Shape Matching Using Contact Maps
In this paper, we study the problem of computing the similarity of two protein structures ring their contact-map overlap. Contact-map overlap abstracts the problem of computing th...
Pankaj K. Agarwal, Nabil H. Mustafa, Yusu Wang
ESA
2004
Springer
145views Algorithms» more  ESA 2004»
14 years 1 months ago
Flows on Few Paths: Algorithms and Lower Bounds
Abstract. Classical network flow theory allows decomposition of flow into several chunks of arbitrary sizes traveling through the network on different paths. In the first part ...
Maren Martens, Martin Skutella
RECOMB
2006
Springer
14 years 8 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
CPAIOR
2006
Springer
14 years 6 days ago
Duality in Optimization and Constraint Satisfaction
We show that various duals that occur in optimization and constraint satisfaction can be classified as inference duals, relaxation duals, or both. We discuss linear programming, su...
John N. Hooker