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» Using Multiple Alignments to Improve Gene Prediction
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125
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MICRO
1999
IEEE
123views Hardware» more  MICRO 1999»
15 years 8 months ago
Improving Branch Predictors by Correlating on Data Values
Branch predictors typically use combinations of branch PC bits and branch histories to make predictions. Recent improvements in branch predictors have come from reducing the effec...
Timothy H. Heil, Zak Smith, James E. Smith
145
Voted
BMCBI
2002
110views more  BMCBI 2002»
15 years 3 months ago
Identifying functional relationships among human genes by systematic analysis of biological literature
Background: The availability of biomedical literature in electronic format has made it possible to implement automatic text processing methods to expose implicit relationships amo...
Yong-Chuan Tao, Rudolph L. Leibel
149
Voted
BMCBI
2005
144views more  BMCBI 2005»
15 years 3 months ago
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in
Background: Comparison of data produced on different microarray platforms often shows surprising discordance. It is not clear whether this discrepancy is caused by noisy data or b...
Scott L. Carter, Aron C. Eklund, Brigham H. Mecham...
147
Voted
NAR
2007
95views more  NAR 2007»
15 years 3 months ago
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
With the integration of the KEGG and Predictome databases as well as two search engines for coexpressed genes/proteins using data sets obtained from the Stanford Microarray Databa...
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan C...
121
Voted
BMCBI
2005
89views more  BMCBI 2005»
15 years 3 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg