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» Using Multiple Alignments to Improve Gene Prediction
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138
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BMCBI
2007
140views more  BMCBI 2007»
15 years 3 months ago
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure in
Background: Structural properties of proteins such as secondary structure and solvent accessibility contribute to three-dimensional structure prediction, not only in the ab initio...
Gianluca Pollastri, Alberto J. M. Martin, Catherin...
BMCBI
2010
103views more  BMCBI 2010»
15 years 3 months ago
Nonparametric methods for the analysis of single-color pathogen microarrays
Background: The analysis of oligonucleotide microarray data in pathogen surveillance and discovery is a challenging task. Target template concentration, nucleic acid integrity, an...
Omar J. Jabado, Sean Conlan, P. Lan Quan, Jeffrey ...
118
Voted
ECML
2007
Springer
15 years 9 months ago
Neighborhood-Based Local Sensitivity
Abstract. We introduce a nonparametric model for sensitivity estimation which relies on generating points similar to the prediction point using its k nearest neighbors. Unlike most...
Paul N. Bennett
107
Voted
BMCBI
2006
179views more  BMCBI 2006»
15 years 3 months ago
Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
Background: In this study, we present a robust and reliable computational method for tag-togene assignment in serial analysis of gene expression (SAGE). The method relies on curre...
Rodrigo Malig, Cristian Varela, Eduardo Agosin, Fr...
129
Voted
BMCBI
2006
242views more  BMCBI 2006»
15 years 3 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage