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» Using constraint programming for lattice protein folding
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NAR
2010
129views more  NAR 2010»
13 years 2 months ago
PROSESS: a protein structure evaluation suite and server
PROSESS (PROtein Structure Evaluation Suite and Server) is a web server designed to evaluate and validate protein structures generated by X-ray crystallography, NMR spectroscopy o...
Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, P...
JUCS
2006
141views more  JUCS 2006»
13 years 7 months ago
Constraint Based Methods for Biological Sequence Analysis
: The need for processing biological information is rapidly growing, owing to the masses of new information in digital form being produced at this time. Old methodologies for proce...
Maryam Bavarian, Verónica Dahl
CLA
2007
13 years 9 months ago
An FDP-Algorithm for Drawing Lattices
In this work we want to discuss an algorithm for drawing line diagrams of lattices based on force directed placement (FDP). This widely used technique in graph drawing introduces f...
Christian Zschalig
CP
2003
Springer
14 years 1 months ago
Propagating N-Ary Rigid-Body Constraints
In this paper, we present an algorithm to propagate an n-ary constraint (with n greater than 2) specifying the relative positions of points in a three-dimensional rigid group. The ...
Ludwig Krippahl, Pedro Barahona
NIPS
2008
13 years 9 months ago
Scalable Algorithms for String Kernels with Inexact Matching
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic