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CP
2003
Springer
15 years 11 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
BMCBI
2010
153views more  BMCBI 2010»
15 years 6 months ago
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
Background: Understanding the community structure of microbes is typically accomplished by sequencing 16S ribosomal RNA (16S rRNA) genes. These community data can be represented b...
Hiroshi Mori, Fumito Maruyama, Ken Kurokawa
BMCBI
2006
115views more  BMCBI 2006»
15 years 6 months ago
AgdbNet - antigen sequence database software for bacterial typing
Background: Bacterial typing schemes based on the sequences of genes encoding surface antigens require databases that provide a uniform, curated, and widely accepted nomenclature ...
Keith A. Jolley, Martin C. J. Maiden
JSC
2008
96views more  JSC 2008»
15 years 6 months ago
Computing the algebraic relations of C-finite sequences and multisequences
We present an algorithm for computing generators for the ideal of algebraic relations among sequences which are given by homogeneous linear recurrence equations with constant coef...
Manuel Kauers, Burkhard Zimmermann
JCT
2000
91views more  JCT 2000»
15 years 6 months ago
Averaging Sequences, Deranged Mappings, and a Problem of Lampert and Slater
We answer a question posed by Lampert and Slater [7]. Consider a sequence of real numbers qn in the interval [0, 1] defined by q0 = 0, q1 = 1, and, for n 1, qn+1 equals an averag...
Neil J. Calkin, E. Rodney Canfield, Herbert S. Wil...