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BMCBI
2010
109views more  BMCBI 2010»
13 years 10 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
CAV
2007
Springer
104views Hardware» more  CAV 2007»
14 years 4 months ago
Revamping TVLA: Making Parametric Shape Analysis Competitive
Abstract. TVLA is a parametric framework for shape analysis that can be easily instantiated to create different kinds of analyzers for checking properties of programs that use link...
Igor Bogudlov, Tal Lev-Ami, Thomas W. Reps, Mooly ...
APBC
2004
125views Bioinformatics» more  APBC 2004»
13 years 11 months ago
A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction
Protein structure prediction is considered to be the holy grail of bioinformatics. Ab initio and homology modelling are two important groups of methods used in protein structure p...
Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schr...
IMC
2006
ACM
14 years 3 months ago
Semi-automated discovery of application session structure
While the problem of analyzing network traffic at the granularity of individual connections has seen considerable previous work and tool development, understanding traffic at a ...
Jayanthkumar Kannan, Jaeyeon Jung, Vern Paxson, Ca...
RECOMB
2004
Springer
14 years 10 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...