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ZUM
1997
Springer
125views Formal Methods» more  ZUM 1997»
14 years 1 months ago
A Formal OO Method Inspired by Fusion and Object-Z
We present a new formal OO method, called FOX, which is a synergetic combination of the semi-formal Fusion method and the formal specification language Object-Z. To manage complex...
Klaus Achatz, Wolfram Schulte
CGO
2009
IEEE
14 years 1 months ago
Communication-Sensitive Static Dataflow for Parallel Message Passing Applications
Message passing is a very popular style of parallel programming, used in a wide variety of applications and supported by many APIs, such as BSD sockets, MPI and PVM. Its importance...
Greg Bronevetsky
BMCBI
2010
137views more  BMCBI 2010»
13 years 9 months ago
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
Background: While the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins that share a common ancestor ...
Michael L. Sierk, Michael E. Smoot, Ellen J. Bass,...
BMCBI
2007
134views more  BMCBI 2007»
13 years 9 months ago
PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results
Background: BLAST searches are widely used for sequence alignment. The search results are commonly adopted for various functional and comparative genomics tasks such as annotating...
Ji He, Xinbin Dai, Xuechun Zhao
BMCBI
2008
111views more  BMCBI 2008»
13 years 9 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...