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BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 7 months ago
Rex: A toolset for reproducing software experiments
Being able to reproduce experiments is the cornerstone of the scientific method. Software experiments are hard to reproduce even if identical hardware is available because externa...
Somu Perianayagam, Gregory R. Andrews, John H. Har...
BIOINFORMATICS
2010
84views more  BIOINFORMATICS 2010»
13 years 10 months ago
partDSA: deletion/substitution/addition algorithm for partitioning the covariate space in prediction
The partDSA package (Molinaro, Lostritto, and Weston 2009) provides a novel recursive partitioning tool for prediction when numerous variables jointly affect the outcome. In such ...
Annette M. Molinaro, Karen Lostritto, Mark J. van ...
CHI
2010
ACM
14 years 4 months ago
G-nome surfer: a tabletop interface for collaborative exploration of genomic data
Molecular and computational biologists develop new insights by gathering heterogeneous data from genomic databases and leveraging bioinformatics tools. Through a qualitative study...
Orit Shaer, Guy Kol, Megan Strait, Chloe Fan, Cath...
BIOINFORMATICS
2010
94views more  BIOINFORMATICS 2010»
13 years 10 months ago
Globally, unrelated protein sequences appear random
Motivation: To test whether protein folding constraints and secondary structure sequence preferences significantly reduce the space of amino acid words in proteins, we compared th...
Daniel T. Lavelle, William R. Pearson
BIOINFORMATICS
2010
139views more  BIOINFORMATICS 2010»
13 years 10 months ago
adephylo: new tools for investigating the phylogenetic signal in biological traits
Summary: adephylo is a package for the R software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed at accounting for or...
Thibaut Jombart, François Balloux, St&eacut...