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BMCBI
2008
100views more  BMCBI 2008»
13 years 8 months ago
easyExon - A Java-based GUI tool for processing and visualization of Affymetrix exon array data
Background: Alternative RNA splicing greatly increases proteome diversity and thereby contribute to species- or tissue-specific functions. The possibility to study alternative spl...
Ting-Yu Chang, Yin-Yi Li, Chih-Hung Jen, Tsun-Po Y...
BMCBI
2008
84views more  BMCBI 2008»
13 years 8 months ago
DNAAlignEditor: DNA alignment editor tool
Background: With advances in DNA re-sequencing methods and Next-Generation parallel sequencing approaches, there has been a large increase in genomic efforts to define and analyze...
Hector Sanchez-Villeda, Steven G. Schroeder, Sherr...
BMCBI
2008
222views more  BMCBI 2008»
13 years 8 months ago
TOBFAC: the database of tobacco transcription factors
Background: Regulation of gene expression at the level of transcription is a major control point in many biological processes. Transcription factors (TFs) can activate and/or repr...
Paul J. Rushton, Marta T. Bokowiec, Thomas W. Laud...
BMCBI
2008
114views more  BMCBI 2008»
13 years 8 months ago
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
Background: Currently, there is a gap between purely theoretical studies of the topology of large bioregulatory networks and the practical traditions and interests of experimental...
Anatolij Potapov, Björn Goemann, Edgar Wingen...
BMCBI
2008
93views more  BMCBI 2008»
13 years 8 months ago
Simultaneous fitting of real-time PCR data with efficiency of amplification modeled as Gaussian function of target fluorescence
Background: In real-time PCR, it is necessary to consider the efficiency of amplification (EA) of amplicons in order to determine initial target levels properly. EAs can be deduce...
Anke Batsch, Andrea Noetel, Christian Fork, Anita ...