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BMCBI
2005
201views more  BMCBI 2005»
13 years 8 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
ICIP
2007
IEEE
14 years 10 months ago
DNA Microarray Image Intensity Extraction using Eigenspots
DNA microarrays are commonly used in the rapid analysis of gene expression in organisms. Image analysis is used to measure the average intensity of circular image areas (spots), w...
Sotirios A. Tsaftaris, Ramandeep Ahuja, Derek J. S...
IJBRA
2007
95views more  IJBRA 2007»
13 years 8 months ago
A novel stationary wavelet denoising algorithm for array-based DNA Copy Number data
Abstract: High-throughput array-based assays have recently been developed to detect DNA copy number (DCN) aberrations. The DCN data from these arrays is characterized by high level...
Yuhang Wang, Siling Wang
CPM
2007
Springer
222views Combinatorics» more  CPM 2007»
14 years 2 months ago
Computing Exact p-Value for Structured Motif
Extracting motifs from a set of DNA sequences is important in computational biology. Occurrence probability is a common used statistics to evaluate the statistical significance of...
Jing Zhang, Xi Chen, Ming Li
RECOMB
2007
Springer
14 years 8 months ago
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
Our group has recently developed a compact, universal protein binding microarray (PBM) that can be used to determine the binding preferences of transcription factors (TFs) [1]. Thi...
Anthony A. Philippakis, Aaron M. Qureshi, Michael ...