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IPPS
2009
IEEE
14 years 2 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2009
IEEE
14 years 2 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
CASES
2009
ACM
14 years 2 months ago
Fine-grain performance scaling of soft vector processors
Embedded systems are often implemented on FPGA devices and 25% of the time [2] include a soft processor— a processor built using the FPGA reprogrammable fabric. Because of their...
Peter Yiannacouras, J. Gregory Steffan, Jonathan R...
CODES
2009
IEEE
13 years 11 months ago
Minimization of the reconfiguration latency for the mapping of applications on FPGA-based systems
Field-Programmable Gate Arrays (FPGAs) have become promising mapping fabric for the implementation of System-on-Chip (SoC) platforms, due to their large capacity and their enhance...
Vincenzo Rana, Srinivasan Murali, David Atienza, M...
BLISS
2009
IEEE
13 years 8 months ago
Autonomous Physical Secret Functions and Clone-Resistant Identification
Self configuring VLSI technology architectures offer a new environment for creating novel security functions. Two such functions for physical security architectures are proposed t...
Wael Adi